Publicazioni

• 2025 IEEE - Proceedings of the 33rd Euromicro International Conference on Parallel, Distributed, and Network-Based Processing (PDP 2025)

  quickSparseM: a library for memory- and time-efficient computation on large, sparse matrices with application to omics data

  Giacomo Baruzzo, Giulia Cesaro, Barbara Di Camillo

• 2025 Oxford University Press - NAR Genomics and Bioinformatics 7

  Differential cellular communication inference framework for large-scale single-cell RNA-sequencing data

  Giulia Cesaro, Giacomo Baruzzo, Gaia Tussardi, Barbara Di Camillo

• 2025 Oxford University Press - Briefings in Bioinformatics 26

  Advances and challenges in cell–cell communication inference: a comprehensive review of tools, resources, and future directions

  Giulia Cesaro, James Shiniti Nagai, Nicolò Gnoato, Alice Chiodi, Gaia Tussardi, Vanessa Klöker, Carmelo Vittorio Musumarra, Ettore Mosca, Ivan G Costa, Barbara Di Camillo, Enrica Calura, Giacomo Baruzzo

• 2025 Elsevier - Simulation Modelling Practice and Theory Volume 145

  Forge4Flame: An intuitive dashboard for designing GPU agent-based models to simulate infectious disease spread

  Daniele Baccega, Irene Terrone, Peter Heywood, Robert Chisholm, Paul Richmond, Sandro Gepiro Contaldo, Lorenzo Bosio, Simone Pernice, Marco Beccuti

• 2025 Springer, Cham - Conference proceedings of Computational Intelligence Methods for Bioinformatics and Biostatistics 2023 volume 14513

  Extension of the GreatMod Modeling Framework to Simulate Non-Markovian Processes with General-Distributed Events

  Irene Terrone, Daniela Volpatto, Simone Pernice, Elvio Amparore, Roberta Sirovich, Francesca Cordero, Marco Beccuti

• 2025 Springer, Cham - Conference proceedings of Computational Intelligence Methods for Bioinformatics and Biostatistics 2024 volume 15276

  PHeP: TrustAlert Open-Source Platform for Enhancing Predictive Healthcare with Deep Learning

  Sandro Gepiro Contaldo, Emanuele Pietropaolo, Lorenzo Bosio, Simone Pernice, Irene Terrone, Daniele Baccega, Yuting Wang, Rahul Kumar Sahoo, Giuseppe Rizzo, Alessia Visconti, Paola Berchialla, Marco Beccuti

• 2024 Frontiers Media SA - Frontiers in Cardiovascular Medicine 11

  Convolutional neural network (CNN)-enabled electrocardiogram (ECG) analysis: a comparison between standard twelve-lead and single-lead setups

  Saglietto, Andrea Baccega, Daniele Esposito, Roberto Anselmino, Matteo Dusi, Veronica Fiandrotti, Attilio De Ferrari, Gaetano Maria

• 2024 Elsevier - Computer Networks

  Intelligent resource allocation in wireless networks: Predictive models for efficient access point management

  Frank, Lucas R Galletta, Antonino Carnevale, Lorenzo Vieira, Alex B Silva, Edelberto Franco

• 2024 Springer - BioData Mining 17

  Seven quick tips for gene-focused computational pangenomic analysis

  Bonnici, Vincenzo Chicco, Davide

• 2024 Elsevier - Journal of Systems and Software 217

  Uncovering gender gap in academia: A comprehensive analysis within the software engineering community

  D’Angelo, Andrea d’Aloisio, Giordano Marzi, Francesca Di Marco, Antinisca Stilo, Giovanni

• 2024 Nature Publishing Group UK London - Scientific Reports 14

  Enhancing COVID-19 forecasting precision through the integration of compartmental models, machine learning and variants

  Baccega, Daniele Castagno, Paolo Fernández Anta, Antonio Sereno, Matteo

• 2023 Springer - International Conference on Machine Learning, Optimization, and Data Science

  A Machine Learning Approach for Source Code Similarity via Graph-Focused Features

  Boldini, Giacomo Diana, Alessio Arceri, Vincenzo Bonnici, Vincenzo Bagnara, Roberto

• 2023 - Proceedings of the 32nd ACM International Conference on Information and Knowledge Management

  MODIMO: Workshop on Multi-Omics Data Integration for Modelling Biological Systems

  Avesani, Simone Bonnici, Vincenzo Pernice, Simone Beccuti, Marco Giugno, Rosalba

• 2023 Falchi F. - CEUR WORKSHOP PROCEEDINGS 3486

  Artificial intelligence methods for biomedical imaging and omics data

  Barbano, Carlo Alberto Beccuti, Marco Cordero, Francesca Ivanov, Desislav Nikolaev Licheri, Nicola Pernice, Simone Presta, Alberto Renzulli, Riccardo Grangetto, Marco

• 2023 IEEE - 2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

  OmniReprodubileCellAnalysis: a comprehensive toolbox for the analysis of cellular biology data

  Tortarolo, Dora Pernice, Simone Clapero, Fabiana Valdembri, Donatella Serini, Guido Riccardo, Federica Tarone, Lidia Bena, Chiara Enrico Bosia, Carla Contaldo, Sandro Gepiro

• 2023 MDPI - Journal of Personalized Medicine 13

  Combining clinical and genetic data to predict response to fingolimod treatment in relapsing remitting multiple sclerosis patients: a precision medicine approach

  Ferrè, Laura Clarelli, Ferdinando Pignolet, Beatrice Mascia, Elisabetta Frasca, Marco Santoro, Silvia Sorosina, Melissa Bucciarelli, Florence Moiola, Lucia Martinelli, Vittorio

• 2023 Elsevier - Journal of Systems and Software

  Architectural support for software performance in continuous software engineering: A systematic mapping study

  Eramo, Romina Tucci, Michele Di Pompeo, Daniele Cortellessa, Vittorio Di Marco, Antinisca Taibi, Davide

• 2023 - Proceedings of the 27th International Database Engineered Applications Symposium

  BIOCHAIN: towards a platform for securely sharing microbiological data

  Bonnici, Vincenzo Arceri, Vincenzo Diana, Alessio Bertini, Flavio Iotti, Eleonora Levante, Alessia Bernini, Valentina Neviani, Erasmo Dal Palù, Alessandro

• 2023 Elsevier - Journal of Biomedical Informatics 148

  PanDelos-frags: A methodology for discovering pangenomic content of incomplete microbial assemblies

  Bonnici, Vincenzo Mengoni, Claudia Mangoni, Manuel Franco, Giuditta Giugno, Rosalba

• 2023 Elsevier - Journal of Biomedical Informatics 148

  A new computational workflow to guide personalized drug therapy

  Pernice, Simone Maglione, Alessandro Tortarolo, Dora Sirovich, Roberta Clerico, Marinella Rolla, Simona Beccuti, Marco Cordero, Francesca

• 2022 Oxford University Press - Briefings in Bioinformatics 23

  Heterogeneous data integration methods for patient similarity networks

  Gliozzo, Jessica Mesiti, Marco Notaro, Marco Petrini, Alessandro Patak, Alex Puertas-Gallardo, Antonio Paccanaro, Alberto Valentini, Giorgio Casiraghi, Elena

• 2022 -

  A methodological framework for the comparative evaluation of multiple imputation methods: multiple imputation of race, ethnicity and body mass index in the US National COVID Cohort Collaborative

  Casiraghi, Elena Wong, Rachel Hall, Margaret Coleman, Ben Notaro, Marco Evans, Michael D Tronieri, Jena S Blau, Hannah Laraway, Bryan Callahan, Tiffany J

• 2022 Am Diabetes Assoc - Diabetes care 45

  Effect of SARS-CoV-2 infection and infection severity on longer-term glycemic control and weight in people with type 2 diabetes

  Wong, Rachel Vaddavalli, Rohith Hall, Margaret A Patel, Monil V Bramante, Carolyn T Casarighi, Elena Johnson, Steven G Lingam, Veena Miller, Joshua D Reusch, Jane

• 2021 - Proceedings of the 30th ACM International Conference on Information & Knowledge Management

  MODIMO: Workshop on Multi-Omics Data Integration for Modelling Biological Systems

  Beccuti, Marco Bonnici, Vincenzo Giugno, Rosalba

• 2017 - Proceedings of the 8th ACM/SPEC on International Conference on Performance Engineering Companion

  DevOps and WSN App: a Bio-Inspired Paradigm

  Di Marco, Antinisca